SRX17737110
GSM6605016: HPSI0114ikolf2-clone1, ASCL1-KO [SMARCB1 IP ASCL1KO KOLF2 R3]; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMARCB1

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
HPSI0114ikolf2-clone1
cell line
HPSI0114ikolf2-clone1
cell type
human induced pluripotent cells
genotype
ASCL1-KO
time
day 24
differentiation stage
Day 24 neuronal cultures
chip antibody
SMARCB1: Abcam ab12167

Sequenced DNA Library

library_name
GSM6605016
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
KAPA Hyper Prep Kit (KapaBiosystems, KR0961)

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
68210066
Reads aligned (%)
96.7
Duplicates removed (%)
66.3
Number of peaks
1520 (qval < 1E-05)

hg19

Number of total reads
68210066
Reads aligned (%)
95.6
Duplicates removed (%)
67.7
Number of peaks
1012 (qval < 1E-05)

Base call quality data from DBCLS SRA