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For hg38
BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: SMARCB1
wikigenes
PDBj
CellType: iPS cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX17737110
GSM6605016: HPSI0114ikolf2-clone1, ASCL1-KO [SMARCB1 IP ASCL1KO KOLF2 R3]; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
SMARCB1
Cell type
Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA
Attributes by original data submitter
Sample
source_name
HPSI0114ikolf2-clone1
cell line
HPSI0114ikolf2-clone1
cell type
human induced pluripotent cells
genotype
ASCL1-KO
time
day 24
differentiation stage
Day 24 neuronal cultures
chip antibody
SMARCB1: Abcam ab12167
Sequenced DNA Library
library_name
GSM6605016
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
KAPA Hyper Prep Kit (KapaBiosystems, KR0961)
Sequencing Platform
instrument_model
Illumina HiSeq 4000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
68210066
Reads aligned (%)
96.7
Duplicates removed (%)
66.3
Number of peaks
1520 (qval < 1E-05)
hg19
Number of total reads
68210066
Reads aligned (%)
95.6
Duplicates removed (%)
67.7
Number of peaks
1012 (qval < 1E-05)
Base call quality data from
DBCLS SRA